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soap bioActor


Fast DNA alignment by soap program.

Execution Choices

  • HadoopMapOnly
  • LocalExecution
  • StratosphereMapOnly


querySequenceFileDNA sequence file in FASTA format.
referencePrefixThe prefix of formatted reference database.


alignmentFileAlignment output file.


programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run soap
ChoiceThe execution choice to run.