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rpsblast alignment.

Execution Choices

  • HadoopMapOnly
  • LocalExecution
  • StratosphereMapOnly


referenceNamerpsblast formatted databases like COG/KOG/PRK.
queryDirAn directory containing all protein sequence files as query.


alignmentDirAn directory containing all alignment output files.


cleanupCmdClean up all files in alignment directory before running.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsE-value cutoff
ChoiceThe execution choice to run.