Workflow Demos

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hmmsearch alignment.

Execution Choices

  • HadoopMapOnly
  • LocalExecution
  • StratosphereMapOnly


referenceNamehmmer formatted databases like PFAM/TIGRFAM.
queryDirAn directory containing all protein sequence files as query.


alignmentDirAn directory containing all alignment output files.


evalueCutoffE-value cutoff
cleanupCmdClean up all files in alignment directory before running.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run
ChoiceThe execution choice to run.