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Downstream analysis of hmmer alignment.


alignmentDirAn directory containing all alignment output files.
referenceNamehmmer formatted databases like PFAM/TIGRFAM.


goMappingTableGO mapping count table.
ecMappingTableEC mapping count table.
famHitTablePFAM/TIGRFAM hit count table.


outputPrefixThe prefix of four output files.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsE-value cutoff.
ChoiceThe execution choice to run.