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bwa align bioActor


Fast DNA alignment by bwa program.

Execution Choices

  • HadoopMapReduce
  • LocalExecution
  • StratosphereMapReduce


querySequenceFileDNA sequence file.
referencePrefixThe prefix of formatted reference database.


alignmentFileThe alignment output file in SAM format.


programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptions"bwasw": bwa-sw algorithm is used in fast alignment.
ChoiceThe execution choice to run.