Workflow Demos

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Downstream analysis of alignment against tRNA database.


alignmentDirAn directory containing all alignment output files.


maskedInputFileInput sequence file with masked tRNA.
tRNATableTable showing the positions of tRNA.
tRNAFilerRNA sequences file.


outputPrefixThe prefix of the three output files.
outputSuffix"coord:mask:seq": generate tRNA table, maksed input and tRNA files.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run
ChoiceThe execution choice to run.